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ZHD/W183F complex with hydrolyzed aZOL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5C8Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 ammonium phosphate, imidazole, potassium chloride
Crystal Properties Matthews coefficient Solvent content 3.23 61.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.514 α = 90 b = 89.796 β = 90 c = 112.752 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97776 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 99.6 0.083 0.023 0.981 32.9 13.3 70759
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 0.593 0.166 0.929
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5c8z 1.8 35 67020 3664 99.56 0.14503 0.14388 0.1577 0.16644 0.1786 RANDOM 20.075
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 0.54 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.15 r_dihedral_angle_3_deg 11.314 r_dihedral_angle_4_deg 8.81 r_dihedral_angle_1_deg 6.38 r_long_range_B_refined 5.817 r_long_range_B_other 5.754 r_scangle_other 5.198 r_scbond_it 3.541 r_scbond_other 3.541 r_mcangle_it 2.356
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.15 r_dihedral_angle_3_deg 11.314 r_dihedral_angle_4_deg 8.81 r_dihedral_angle_1_deg 6.38 r_long_range_B_refined 5.817 r_long_range_B_other 5.754 r_scangle_other 5.198 r_scbond_it 3.541 r_scbond_other 3.541 r_mcangle_it 2.356 r_mcangle_other 2.356 r_mcbond_it 1.805 r_mcbond_other 1.799 r_angle_refined_deg 1.732 r_angle_other_deg 1.619 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4104 Nucleic Acid Atoms Solvent Atoms 415 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing