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Crystal structure of a frog ependymin related protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.2M Calcium acetate hydrate, 0.1M Sodium cacodylate trihydrate pH 6.5, 18%(w/v) Polyethylene glycol 8,000
Crystal Properties Matthews coefficient Solvent content 2.8 56.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.208 α = 90 b = 61.208 β = 90 c = 236.196 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2018-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 1.540 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 53.01 99.7 70.5 19.8 18642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 53.01 17685 952 99.67 0.19819 0.1942 0.27753 0.3017 RANDOM 55.467
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 0.48 0.95 -3.08
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.313 r_dihedral_angle_2_deg 35.918 r_sphericity_bonded 28.537 r_dihedral_angle_4_deg 18.925 r_dihedral_angle_3_deg 16.541 r_long_range_B_refined 13.967 r_long_range_B_other 13.941 r_scangle_other 12.952 r_scbond_it 11.361 r_scbond_other 11.355
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.313 r_dihedral_angle_2_deg 35.918 r_sphericity_bonded 28.537 r_dihedral_angle_4_deg 18.925 r_dihedral_angle_3_deg 16.541 r_long_range_B_refined 13.967 r_long_range_B_other 13.941 r_scangle_other 12.952 r_scbond_it 11.361 r_scbond_other 11.355 r_mcangle_it 11.344 r_mcangle_other 11.338 r_mcbond_it 10.002 r_mcbond_other 9.99 r_dihedral_angle_1_deg 7.567 r_rigid_bond_restr 5.132 r_angle_refined_deg 1.74 r_angle_other_deg 1.473 r_chiral_restr 0.103 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1554 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling ARP/wARP model building PHENIX phasing