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Crystal structure of a mini fungal lectin, PhoSL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 283 0.2M Ammonium sulfate, 30% w/v Polyethylene glycol 8000
Crystal Properties Matthews coefficient Solvent content 2.21 44.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.475 α = 90 b = 42.475 β = 90 c = 37.704 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2018-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 05A 1.7 NSRRC TPS 05A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.06 30 99.3 0.036 0.997 77.87 21.2 17498
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.06 1.1 96.2 0.213 0.993 14.41 19.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.06 21.25 16487 895 98.96 0.13695 0.13577 0.1489 0.15798 0.1574 RANDOM 17.174
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.09 -0.19 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.642 r_dihedral_angle_4_deg 31.267 r_dihedral_angle_3_deg 8.25 r_dihedral_angle_1_deg 7.555 r_long_range_B_refined 2.811 r_long_range_B_other 2.478 r_scangle_other 2.45 r_scbond_it 1.941 r_scbond_other 1.889 r_rigid_bond_restr 1.722
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.642 r_dihedral_angle_4_deg 31.267 r_dihedral_angle_3_deg 8.25 r_dihedral_angle_1_deg 7.555 r_long_range_B_refined 2.811 r_long_range_B_other 2.478 r_scangle_other 2.45 r_scbond_it 1.941 r_scbond_other 1.889 r_rigid_bond_restr 1.722 r_angle_refined_deg 1.623 r_angle_other_deg 1.561 r_mcangle_it 1.462 r_mcangle_other 1.449 r_mcbond_it 1.032 r_mcbond_other 0.998 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 314 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 10
Software Software Software Name Purpose PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling AutoSol phasing