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Crystal structure of S. aureus CntK with C72S mutation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 0.20 Lithium sulfate, 0.10 M Bis-Tris pH 6.5, 25% PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.19 43.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.09 α = 90 b = 60.067 β = 116.63 c = 76.92 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 PIXEL DECTRIS PILATUS3 S 6M 2018-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 99.2 0.095 27.2 3.4 39036
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.64 0.51 3.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.58 43.4 37077 1902 99.4 0.17526 0.17403 0.1835 0.1981 0.2102 RANDOM 17.758
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 0.08 -0.51 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.274 r_dihedral_angle_4_deg 22.902 r_dihedral_angle_3_deg 12.18 r_dihedral_angle_1_deg 6.463 r_long_range_B_refined 4.246 r_long_range_B_other 4.245 r_scangle_other 2.58 r_scbond_other 1.712 r_scbond_it 1.71 r_mcangle_other 1.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.274 r_dihedral_angle_4_deg 22.902 r_dihedral_angle_3_deg 12.18 r_dihedral_angle_1_deg 6.463 r_long_range_B_refined 4.246 r_long_range_B_other 4.245 r_scangle_other 2.58 r_scbond_other 1.712 r_scbond_it 1.71 r_mcangle_other 1.703 r_mcangle_it 1.701 r_angle_other_deg 1.45 r_angle_refined_deg 1.394 r_mcbond_it 1.036 r_mcbond_other 1.025 r_chiral_restr 0.056 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2050 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AutoSol phasing