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Aspergillus fumigatus Rho1 GsGTP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ZVP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 crystals were obtained in Morpheus commercial crystallization screen,
Imidazole and MES monohydrate (acid) at pH 6.5, 40% v/v PEG 500 MME and 20 % w/v PEG 20000, and 0.2M 1,6-Hexanediol, 0.2M 1-Butanol 0.2M 1,2-Propanediol, 0.2M 2-Propanol, 0.2M 1,4- Butanediol and 0.2M 1,3-Propanediol.
Crystal Properties Matthews coefficient Solvent content 2.11 41.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.25 α = 90 b = 65.7 β = 90 c = 75.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2019-01-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE RIGAKU MICROMAX-003 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 30.11 99.9 0.192 0.115 0.982 5.8 6.5 8136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 99.4 0.37 0.246 0.909 3.2 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ZVP 2.35 30.11 7699 402 99.86 0.23448 0.23237 0.2363 0.27505 0.2785 RANDOM 18.237
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.2 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.038 r_dihedral_angle_4_deg 23.348 r_dihedral_angle_3_deg 13.685 r_dihedral_angle_1_deg 5.821 r_long_range_B_refined 2.514 r_long_range_B_other 2.211 r_angle_refined_deg 1.214 r_angle_other_deg 1.055 r_chiral_restr 0.039 r_mcangle_it 0.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.038 r_dihedral_angle_4_deg 23.348 r_dihedral_angle_3_deg 13.685 r_dihedral_angle_1_deg 5.821 r_long_range_B_refined 2.514 r_long_range_B_other 2.211 r_angle_refined_deg 1.214 r_angle_other_deg 1.055 r_chiral_restr 0.039 r_mcangle_it 0.034 r_mcangle_other 0.034 r_scangle_other 0.026 r_mcbond_it 0.018 r_mcbond_other 0.018 r_scbond_it 0.018 r_scbond_other 0.014 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1414 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing