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Ligand complex structure of GH10 family xylanase XynAF1, soaking for 20 minutes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MES pH6.5, 25%(w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.13 42.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.353 α = 73.94 b = 57.365 β = 80.58 c = 64.845 γ = 68.62
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.979 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 62.16 91.28 0.073 19.28 3.5 180455 10.99
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.18 88.56 0.522 2.625 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.16 62.16 171492 8963 91.3 0.1383 0.1373 0.1386 0.1569 0.1585 RANDOM 12.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 -0.14 0.35 0.01 0.26 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.741 r_dihedral_angle_3_deg 11.291 r_dihedral_angle_1_deg 7.058 r_angle_refined_deg 2.526 r_dihedral_angle_4_deg 1.35 r_angle_other_deg 1.28 r_chiral_restr 0.234 r_bond_refined_d 0.027 r_gen_planes_refined 0.014 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.741 r_dihedral_angle_3_deg 11.291 r_dihedral_angle_1_deg 7.058 r_angle_refined_deg 2.526 r_dihedral_angle_4_deg 1.35 r_angle_other_deg 1.28 r_chiral_restr 0.234 r_bond_refined_d 0.027 r_gen_planes_refined 0.014 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4870 Nucleic Acid Atoms Solvent Atoms 608 Heterogen Atoms 137
Software Software Software Name Purpose HKL-2000 data reduction HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing