X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29350 mM NaCl, 0.1 M Imidazole, 10 mM Tris, pH 8.0
Crystal Properties
Matthews coefficientSolvent content
6.0675.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 229.456α = 90
b = 229.456β = 90
c = 229.456γ = 90
Symmetry
Space GroupF 41 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2017-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL18U10.979SSRFBL18U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6501000.1820.04426.818.716495
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.641000.8440.1960.923.5819.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADFREE R-VALUE2.644.21561183199.940.174690.17240.2193RANDOM49.259
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.177
r_dihedral_angle_4_deg22.066
r_dihedral_angle_3_deg17.641
r_scangle_other10.467
r_mcangle_it9.72
r_mcangle_other9.716
r_long_range_B_other9.569
r_long_range_B_refined9.568
r_scbond_it9.374
r_scbond_other9.372
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.177
r_dihedral_angle_4_deg22.066
r_dihedral_angle_3_deg17.641
r_scangle_other10.467
r_mcangle_it9.72
r_mcangle_other9.716
r_long_range_B_other9.569
r_long_range_B_refined9.568
r_scbond_it9.374
r_scbond_other9.372
r_mcbond_it8.119
r_mcbond_other8.101
r_dihedral_angle_1_deg7.174
r_rigid_bond_restr4.236
r_angle_refined_deg2.001
r_angle_other_deg1.447
r_chiral_restr0.099
r_bond_refined_d0.021
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1359
Nucleic Acid Atoms
Solvent Atoms51
Heterogen Atoms74

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHENIXphasing