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Crystal structure of AtFKBP53 C-terminal domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UQA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 0.1 M Tris (pH 8.5), 3.0 M NaCl
Crystal Properties Matthews coefficient Solvent content 2.42 49.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.04 α = 90 b = 48.19 β = 90 c = 59.5 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD MARMOSAIC 225 mm CCD 2016-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON RRCAT INDUS-2 BEAMLINE PX-BL21 0.9794 RRCAT INDUS-2 PX-BL21
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.13 28.25 99.3 0.064 0.069 0.025 0.998 15.4 7.2 46611 6.355
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.13 1.15 98.5 0.29 0.313 0.118 0.957 5 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3UQA 1.13 28.25 44215 2336 99.16 0.1259 0.1249 0.1322 0.14543 0.1458 RANDOM 12.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.01 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.709 r_sphericity_free 22.8 r_dihedral_angle_4_deg 18.568 r_dihedral_angle_3_deg 11.391 r_sphericity_bonded 8.344 r_rigid_bond_restr 7.719 r_dihedral_angle_1_deg 7.517 r_long_range_B_refined 3.477 r_long_range_B_other 3.41 r_mcangle_it 3.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.709 r_sphericity_free 22.8 r_dihedral_angle_4_deg 18.568 r_dihedral_angle_3_deg 11.391 r_sphericity_bonded 8.344 r_rigid_bond_restr 7.719 r_dihedral_angle_1_deg 7.517 r_long_range_B_refined 3.477 r_long_range_B_other 3.41 r_mcangle_it 3.093 r_mcangle_other 3.091 r_scangle_other 2.81 r_mcbond_other 2.751 r_mcbond_it 2.749 r_scbond_it 2.334 r_scbond_other 2.332 r_angle_refined_deg 2.088 r_angle_other_deg 1.219 r_chiral_restr 0.129 r_bond_refined_d 0.02 r_gen_planes_refined 0.013 r_gen_planes_other 0.006 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 831 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing