6IZP
Solution structure of the complex of naphthyridine carbamate dimer and an RNA with UGGAA-UGGAA pentad
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 75 uM RNA (29-MER), 150 uM NCD | 95% H2O/5% D2O | 100 mM NaCl | 6.9 | 1 atm | 288 | Bruker AVANCE 600 |
2 | 2D 1H-1H NOESY | 75 uM RNA (29-MER), 150 uM NCD | 95% H2O/5% D2O | 100 mM NaCl | 6.9 | 1 atm | 288 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | structure calculation | CNS | 1.3 | Brunger, Adams, Clore, Gros, Nilges and Read |
3 | chemical shift assignment | Sparky | 3 | Goddard |
4 | peak picking | Sparky | 3 | Goddard |