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Loop deletion and proline insertion mutant (deleting six residues and inserted three proline residues)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 292 2.5 M Ammonium sulfate
0.1 M sodium acetate
Crystal Properties Matthews coefficient Solvent content 4.39 71.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.826 α = 90 b = 86.826 β = 90 c = 105.532 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2017-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 20 98.3 0.114 30.9 7.6 18350
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.05 100 0.6 6.15 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2G8C 3 20 8829 478 97.06 0.24966 0.24702 0.2511 0.30031 0.2964 RANDOM 111.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.39 1.2 2.39 -7.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.491 r_long_range_B_refined 21.199 r_long_range_B_other 21.198 r_dihedral_angle_3_deg 18.831 r_scangle_other 14.938 r_mcangle_it 14.695 r_mcangle_other 14.694 r_dihedral_angle_4_deg 14.686 r_mcbond_it 9.845 r_mcbond_other 9.824
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.491 r_long_range_B_refined 21.199 r_long_range_B_other 21.198 r_dihedral_angle_3_deg 18.831 r_scangle_other 14.938 r_mcangle_it 14.695 r_mcangle_other 14.694 r_dihedral_angle_4_deg 14.686 r_mcbond_it 9.845 r_mcbond_other 9.824 r_scbond_it 9.44 r_scbond_other 9.44 r_dihedral_angle_1_deg 8.911 r_angle_refined_deg 1.791 r_angle_other_deg 1.017 r_chiral_restr 0.085 r_bond_refined_d 0.013 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1811 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing Coot model building