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Crystal structure of a bacterial Bestrophin homolog from Klebsiella pneumoniae with a mutation I180T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.05M zinc acetate, 6% v/v ethylene glycol, 0.1M sodium cacodylate, pH 6.0, 6.6% w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 4.26 71.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.835 α = 90 b = 159.247 β = 90 c = 159.924 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.98 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.18 112.84 87.2 8.18 1.9 42873
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.18 3.29
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.18 112.84 40862 2000 87.21 0.24332 0.24171 0.2431 0.27567 0.2761 RANDOM 93.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 3.66 -3.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.714 r_long_range_B_refined 19.478 r_long_range_B_other 19.478 r_dihedral_angle_3_deg 15.825 r_dihedral_angle_4_deg 14.27 r_scangle_other 13.523 r_mcangle_other 12.942 r_mcangle_it 12.938 r_scbond_it 8.744 r_scbond_other 8.743
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.714 r_long_range_B_refined 19.478 r_long_range_B_other 19.478 r_dihedral_angle_3_deg 15.825 r_dihedral_angle_4_deg 14.27 r_scangle_other 13.523 r_mcangle_other 12.942 r_mcangle_it 12.938 r_scbond_it 8.744 r_scbond_other 8.743 r_mcbond_it 8.413 r_mcbond_other 8.404 r_dihedral_angle_1_deg 6.118 r_angle_refined_deg 1.273 r_angle_other_deg 0.819 r_chiral_restr 0.067 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10570 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing