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Crystal structure of chimeric KsgA with loop 12 from Erm
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M Sodium chloride, 0.05M Sodium cacodylate trihydrate pH 6.0, 10% w/v Polyethylene glycol 4000, 0.0005M Spermine
Crystal Properties Matthews coefficient Solvent content 2.71 54.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.693 α = 90 b = 79.499 β = 90 c = 130.115 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.98 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 67.84 99.8 0.185 13.3 5.6 7342
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.8 3.897 100 0.539 5.57 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.8 67.84 6971 349 99.8 0.30761 0.30377 0.3101 0.38502 0.3712 RANDOM 61.524
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.1 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.176 r_dihedral_angle_3_deg 20.561 r_dihedral_angle_4_deg 18.144 r_long_range_B_refined 9.049 r_long_range_B_other 9.048 r_dihedral_angle_1_deg 8.672 r_mcangle_it 5.64 r_mcangle_other 5.639 r_scangle_other 4.727 r_mcbond_it 3.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.176 r_dihedral_angle_3_deg 20.561 r_dihedral_angle_4_deg 18.144 r_long_range_B_refined 9.049 r_long_range_B_other 9.048 r_dihedral_angle_1_deg 8.672 r_mcangle_it 5.64 r_mcangle_other 5.639 r_scangle_other 4.727 r_mcbond_it 3.309 r_mcbond_other 3.308 r_scbond_it 2.71 r_scbond_other 2.709 r_angle_refined_deg 1.571 r_angle_other_deg 1.103 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3403 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling Auto-Rickshaw phasing