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Human cathepsin-C in complex with dipeptidyl cyclopropyl nitrile inhibitor 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 20.0 % (w/v) PEG 3000
0.2 M ammonium citrate dibasic
2.5 mM DTT
Crystal Properties Matthews coefficient Solvent content 2.79 55.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.365 α = 90 b = 87.549 β = 90 c = 115.004 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2010-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER X8 PROTEUM 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.3 98.2 0.069 23.8 11.5 30537
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 85.5 0.164 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 28.231 29338 1466 97.252 0.162 0.1596 0.2034 0.2143 20.023
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.146 0.417 -0.563
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.536 r_dihedral_angle_4_deg 23.757 r_dihedral_angle_1_deg 19.05 r_dihedral_angle_3_deg 14.674 r_lrange_other 5.601 r_lrange_it 5.599 r_dihedral_angle_other_3_deg 4.877 r_mcangle_it 2.349 r_mcangle_other 2.349 r_scangle_it 2.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.536 r_dihedral_angle_4_deg 23.757 r_dihedral_angle_1_deg 19.05 r_dihedral_angle_3_deg 14.674 r_lrange_other 5.601 r_lrange_it 5.599 r_dihedral_angle_other_3_deg 4.877 r_mcangle_it 2.349 r_mcangle_other 2.349 r_scangle_it 2.225 r_scangle_other 2.225 r_angle_refined_deg 1.931 r_angle_other_deg 1.462 r_mcbond_it 1.396 r_mcbond_other 1.395 r_scbond_it 1.358 r_scbond_other 1.358 r_symmetry_xyhbond_nbd_refined 0.33 r_symmetry_nbd_refined 0.244 r_nbd_refined 0.229 r_nbd_other 0.216 r_xyhbond_nbd_refined 0.212 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.184 r_symmetry_nbtor_other 0.093 r_symmetry_xyhbond_nbd_other 0.093 r_chiral_restr 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2759 Nucleic Acid Atoms Solvent Atoms 349 Heterogen Atoms 127
Software Software Software Name Purpose REFMAC refinement PROTEUM data reduction PROTEUM data scaling REFMAC phasing