☰ Navigation Tabs
Structure of the ferrioxamine B transporter FoxA from Pseudomonas aeruginosa, apo state
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 1.8 M Ammonium sulfate, 0.1M HEPES pH 7.4
Crystal Properties Matthews coefficient Solvent content 5.24 76.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 174.554 α = 90 b = 174.554 β = 90 c = 180.245 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2017-06-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 1.03332 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 48.53 99.9 0.206 0.226 0.092 0.997 10 10.7 40394
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.91 100 0.547 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 48.53 38331 2028 99.84 0.2156 0.2133 0.2252 0.2599 0.2686 RANDOM 58.049
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.28 0.56 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.729 r_dihedral_angle_4_deg 20.75 r_dihedral_angle_3_deg 19.69 r_dihedral_angle_1_deg 8.848 r_angle_refined_deg 2.34 r_angle_other_deg 1.151 r_chiral_restr 0.129 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.729 r_dihedral_angle_4_deg 20.75 r_dihedral_angle_3_deg 19.69 r_dihedral_angle_1_deg 8.848 r_angle_refined_deg 2.34 r_angle_other_deg 1.151 r_chiral_restr 0.129 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5325 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 193
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing PDB_EXTRACT data extraction