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Crystal Structure of Outer Cell Wall Cytochrome OcwA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 25% PEG 3350, 100 mM magnesium chloride, 100 mM HEPES/ NaOH
Crystal Properties Matthews coefficient Solvent content 2.39 48.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.855 α = 101.54 b = 62.969 β = 99.13 c = 84.21 γ = 98.41
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 80.94 98.1 0.075 0.047 0.998 11 3.5 53356
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 97.3 1.29 0.4 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 80.94 50713 2643 98.1 0.20428 0.20269 0.2079 0.23337 0.2339 RANDOM 58.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.24 1.82 0.2 -0.67 -1.93 -1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.653 r_dihedral_angle_3_deg 13.354 r_dihedral_angle_4_deg 11.1 r_long_range_B_refined 6.456 r_long_range_B_other 6.443 r_dihedral_angle_1_deg 6.11 r_mcangle_it 4.494 r_mcangle_other 4.494 r_scangle_other 4.165 r_mcbond_it 2.742
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.653 r_dihedral_angle_3_deg 13.354 r_dihedral_angle_4_deg 11.1 r_long_range_B_refined 6.456 r_long_range_B_other 6.443 r_dihedral_angle_1_deg 6.11 r_mcangle_it 4.494 r_mcangle_other 4.494 r_scangle_other 4.165 r_mcbond_it 2.742 r_mcbond_other 2.742 r_scbond_it 2.543 r_scbond_other 2.543 r_angle_refined_deg 1.416 r_angle_other_deg 0.999 r_chiral_restr 0.12 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.01 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7326 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 782
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing