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Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M Na Acetate,
0.1 NH4Cl,
15-20 % PEG 2000
pH 4.5-4.9
Crystal Properties Matthews coefficient Solvent content 2.99 58.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.68 α = 90 b = 104.04 β = 90 c = 105.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.96858 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 55.54 99.9 0.109 0.112 0.997 15.2 18.7 152478 16.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.41 98.7 1.278 1.377 0.546 1.3 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.37 55.54 144858 7522 99.9 0.15198 0.15078 0.1501 0.17532 0.1748 RANDOM 23.941
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.2 0.84 -2.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.785 r_sphericity_free 21.073 r_dihedral_angle_4_deg 15.886 r_dihedral_angle_3_deg 13.745 r_sphericity_bonded 6.067 r_dihedral_angle_1_deg 5.667 r_long_range_B_refined 2.717 r_rigid_bond_restr 2.683 r_long_range_B_other 2.432 r_scangle_other 1.739
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.785 r_sphericity_free 21.073 r_dihedral_angle_4_deg 15.886 r_dihedral_angle_3_deg 13.745 r_sphericity_bonded 6.067 r_dihedral_angle_1_deg 5.667 r_long_range_B_refined 2.717 r_rigid_bond_restr 2.683 r_long_range_B_other 2.432 r_scangle_other 1.739 r_angle_refined_deg 1.659 r_mcangle_it 1.416 r_mcangle_other 1.416 r_scbond_it 1.409 r_scbond_other 1.409 r_mcbond_it 1.094 r_mcbond_other 1.081 r_angle_other_deg 0.963 r_chiral_restr 0.103 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4128 Nucleic Acid Atoms Solvent Atoms 661 Heterogen Atoms 168
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing xia2 data reduction