6I16

CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 15


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6I10 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP529218-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties
Matthews coefficientSolvent content
2.3848.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.62α = 90
b = 87.3β = 90
c = 98.1γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-07-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.97949DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1260.6298.10.0790.0870.03615.75.63519426.188
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0396.70.7280.8050.3382.25.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6I10251.5933451168897.870.20430.20250.2395RANDOM34.837
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.361-1.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.581
r_dihedral_angle_4_deg14.681
r_dihedral_angle_3_deg13.271
r_dihedral_angle_1_deg4.936
r_angle_refined_deg1.727
r_mcangle_it1.707
r_angle_other_deg1.654
r_mcbond_it1.068
r_mcbond_other1.067
r_chiral_restr0.114
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.581
r_dihedral_angle_4_deg14.681
r_dihedral_angle_3_deg13.271
r_dihedral_angle_1_deg4.936
r_angle_refined_deg1.727
r_mcangle_it1.707
r_angle_other_deg1.654
r_mcbond_it1.068
r_mcbond_other1.067
r_chiral_restr0.114
r_bond_refined_d0.015
r_gen_planes_other0.011
r_gen_planes_refined0.008
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3784
Nucleic Acid Atoms
Solvent Atoms275
Heterogen Atoms33

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
xia2data reduction
xia2data scaling