☰ Navigation Tabs
CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 15
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 292 18-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.38 48.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.62 α = 90 b = 87.3 β = 90 c = 98.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 60.62 98.1 0.079 0.087 0.036 15.7 5.6 35194 26.188
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 96.7 0.728 0.805 0.338 2.2 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6I10 2 51.59 33451 1688 97.87 0.2043 0.2025 0.2051 0.2395 0.2387 RANDOM 34.837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 1 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.581 r_dihedral_angle_4_deg 14.681 r_dihedral_angle_3_deg 13.271 r_dihedral_angle_1_deg 4.936 r_angle_refined_deg 1.727 r_mcangle_it 1.707 r_angle_other_deg 1.654 r_mcbond_it 1.068 r_mcbond_other 1.067 r_chiral_restr 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.581 r_dihedral_angle_4_deg 14.681 r_dihedral_angle_3_deg 13.271 r_dihedral_angle_1_deg 4.936 r_angle_refined_deg 1.727 r_mcangle_it 1.707 r_angle_other_deg 1.654 r_mcbond_it 1.068 r_mcbond_other 1.067 r_chiral_restr 0.114 r_bond_refined_d 0.015 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3784 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction xia2 data scaling