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CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 292 18-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.38 48.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.55 α = 90 b = 87.41 β = 90 c = 98.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9793 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 60.55 100 0.06 0.072 0.028 15.8 6.5 63454 22.448
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 100 1.085 1.283 0.508 1.7 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6I10 1.65 51.6 60322 3062 99.93 0.1842 0.1831 0.1888 0.2084 0.2161 RANDOM 31.222
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 1.3 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.564 r_dihedral_angle_4_deg 15.726 r_dihedral_angle_3_deg 12.51 r_dihedral_angle_1_deg 5.318 r_angle_refined_deg 1.605 r_angle_other_deg 1.582 r_mcangle_it 1.523 r_mcbond_it 0.951 r_mcbond_other 0.948 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.564 r_dihedral_angle_4_deg 15.726 r_dihedral_angle_3_deg 12.51 r_dihedral_angle_1_deg 5.318 r_angle_refined_deg 1.605 r_angle_other_deg 1.582 r_mcangle_it 1.523 r_mcbond_it 0.951 r_mcbond_other 0.948 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_other 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3784 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction xia2 data reduction