☰ Navigation Tabs
CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 292 18-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.37 48.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.62 α = 90 b = 87.32 β = 90 c = 97.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 51.55 98.4 0.061 0.074 0.03 14.2 6.2 60096 26.908
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 100 1.161 1.389 0.547 1.4 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6I10 1.67 51.55 57075 2885 98.21 0.2173 0.2158 0.2188 0.2468 0.2503 RANDOM 35.187
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.39 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.539 r_dihedral_angle_4_deg 15.192 r_dihedral_angle_3_deg 12.85 r_dihedral_angle_1_deg 5.264 r_angle_refined_deg 1.603 r_angle_other_deg 1.589 r_mcangle_it 1.512 r_mcbond_it 0.928 r_mcbond_other 0.926 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.539 r_dihedral_angle_4_deg 15.192 r_dihedral_angle_3_deg 12.85 r_dihedral_angle_1_deg 5.264 r_angle_refined_deg 1.603 r_angle_other_deg 1.589 r_mcangle_it 1.512 r_mcbond_it 0.928 r_mcbond_other 0.926 r_chiral_restr 0.1 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3784 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction xia2 data reduction