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CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3P53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 292 18-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.52 51.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.667 α = 90 b = 91.839 β = 90 c = 97.062 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2014-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54056
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 48.53 99.7 0.101 0.101 5.9 3.68 32836
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 98.1 0.471 1.8 2.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3P53 2.1 48.53 31006 1718 99.53 0.2519 0.2499 0.2487 0.287 0.287 RANDOM 44.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.65 -1.16 5.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.353 r_dihedral_angle_4_deg 15.995 r_dihedral_angle_3_deg 13.591 r_dihedral_angle_1_deg 4.211 r_angle_refined_deg 1.768 r_angle_other_deg 1.66 r_mcangle_it 1.478 r_mcbond_it 0.858 r_mcbond_other 0.857 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.353 r_dihedral_angle_4_deg 15.995 r_dihedral_angle_3_deg 13.591 r_dihedral_angle_1_deg 4.211 r_angle_refined_deg 1.768 r_angle_other_deg 1.66 r_mcangle_it 1.478 r_mcbond_it 0.858 r_mcbond_other 0.857 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3777 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement d*TREK data scaling PDB_EXTRACT data extraction d*TREK data reduction PHASER phasing