☰ Navigation Tabs
Yeast 20S proteasome beta2-G45A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CZ4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 20 mM MgAC2, 13% MPD, 0.1 M MES
Crystal Properties Matthews coefficient Solvent content 3.67 66.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.42 α = 90 b = 301.17 β = 113.03 c = 144.61 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2014-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 96 0.091 9.5 3.1 250653
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 98.6 0.493 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5CZ4 2.8 15 236637 12455 95.51 0.19643 0.195 0.203 0.22374 0.2287 RANDOM 63.236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.17 0.06 -6.12 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.056 r_sphericity_free 34.274 r_dihedral_angle_3_deg 14.536 r_dihedral_angle_4_deg 13.945 r_sphericity_bonded 5.772 r_dihedral_angle_1_deg 5.741 r_long_range_B_refined 3.331 r_long_range_B_other 3.272 r_mcangle_it 2.764 r_mcangle_other 2.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.056 r_sphericity_free 34.274 r_dihedral_angle_3_deg 14.536 r_dihedral_angle_4_deg 13.945 r_sphericity_bonded 5.772 r_dihedral_angle_1_deg 5.741 r_long_range_B_refined 3.331 r_long_range_B_other 3.272 r_mcangle_it 2.764 r_mcangle_other 2.763 r_scangle_other 2.458 r_mcbond_it 2.043 r_mcbond_other 2.043 r_scbond_it 1.989 r_scbond_other 1.989 r_angle_refined_deg 1.143 r_rigid_bond_restr 0.955 r_angle_other_deg 0.891 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 49378 Nucleic Acid Atoms Solvent Atoms 722 Heterogen Atoms 27
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC phasing REFMAC refinement