6HU9
III2-IV2 mitochondrial respiratory supercomplex from S. cerevisiae
ELECTRON MICROSCOPY
Refinement
RMS Deviations | |
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Key | Refinement Restraint Deviation |
f_dihedral_angle_d | 17.856 |
f_angle_d | 1.069 |
f_chiral_restr | 0.057 |
f_bond_d | 0.008 |
f_plane_restr | 0.008 |
Sample |
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III2-IV2 mitochondrial respiratory supercomplex |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | FEI VITROBOT MARK IV |
Cryogen Name | ETHANE |
Sample Vitrification Details | 3 microL of sample applied to negatively glow discharged grid, blot force -10; blotting time 8.5 sec |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 44915 |
Reported Resolution (Å) | 3.35 |
Resolution Method | FSC 0.5 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (1KYO, 1V54) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | RIGID BODY FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | GATAN K2 QUANTUM (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 1.645 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | |
Maximum Defocus (nm) | |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | 130000 |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
---|---|---|
Task | Software Package | Version |
PARTICLE SELECTION | Gautomatch | 0.53 |
IMAGE ACQUISITION | EPU | |
CTF CORRECTION | CTFFIND | |
MODEL FITTING | UCSF Chimera | |
MODEL REFINEMENT | PHENIX | 1.13_2998 |
INITIAL EULER ASSIGNMENT | RELION | 3.0 |
FINAL EULER ASSIGNMENT | RELION | 3.0 |
CLASSIFICATION | RELION | 3.0 |
RECONSTRUCTION | RELION | 3.0 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
NONE |