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Crystal structure of the oxidized form of the transcription regulator RsrR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 NaCl, PEG6000, MES, anaerobic
Crystal Properties Matthews coefficient Solvent content 2.46 50.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.29 α = 90 b = 94.51 β = 93.24 c = 99.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-06-27 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.945 ESRF ID23-1 2 SYNCHROTRON ESRF BEAMLINE ID23-1 1.73978 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 47.26 98.6 0.04 0.047 0.024 0.999 19.5 3.8 87187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 96.7 1.436 1.662 0.828 0.375 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 47.26 82904 4156 98.25 0.1426 0.1403 0.1542 0.1903 0.195 RANDOM 38.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.59 -0.06 0.66
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 24.667 r_dihedral_angle_2_deg 23.424 r_sphericity_bonded 17.4 r_dihedral_angle_4_deg 14.24 r_dihedral_angle_3_deg 13.184 r_rigid_bond_restr 4.777 r_dihedral_angle_1_deg 4.69 r_angle_other_deg 1.913 r_angle_refined_deg 1.436 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 24.667 r_dihedral_angle_2_deg 23.424 r_sphericity_bonded 17.4 r_dihedral_angle_4_deg 14.24 r_dihedral_angle_3_deg 13.184 r_rigid_bond_restr 4.777 r_dihedral_angle_1_deg 4.69 r_angle_other_deg 1.913 r_angle_refined_deg 1.436 r_chiral_restr 0.077 r_gen_planes_other 0.024 r_bond_other_d 0.021 r_gen_planes_refined 0.008 r_bond_refined_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4668 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 156
Software Software Software Name Purpose XDS data reduction Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHENIX phasing