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C-terminal domain of the TssA component of the type VI secretion system from Burkholderia cenocepacia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 0.1M sodium chloride, 0.1M Tris pH8.0, 15% (v/v) ethanol, 5% (v/v) MPD
Crystal Properties Matthews coefficient Solvent content 4.48 72.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.33 α = 90 b = 201.7 β = 90 c = 263.66 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 1.70001 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.08 41.49 99.9 0.131 0.04 17.5 12.6 23602
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.08 3.16 100 0.786 0.251 3.7 11.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.08 41.49 22387 1215 99.85 0.20048 0.19826 0.1987 0.24245 0.2394 RANDOM 69.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.1 -2.82 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.538 r_dihedral_angle_3_deg 14.281 r_dihedral_angle_4_deg 13.861 r_long_range_B_refined 10.372 r_long_range_B_other 10.372 r_scangle_other 7.752 r_mcangle_it 7.32 r_mcangle_other 7.32 r_scbond_it 4.763 r_scbond_other 4.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.538 r_dihedral_angle_3_deg 14.281 r_dihedral_angle_4_deg 13.861 r_long_range_B_refined 10.372 r_long_range_B_other 10.372 r_scangle_other 7.752 r_mcangle_it 7.32 r_mcangle_other 7.32 r_scbond_it 4.763 r_scbond_other 4.762 r_mcbond_it 4.555 r_mcbond_other 4.542 r_dihedral_angle_1_deg 3.132 r_angle_refined_deg 1.621 r_angle_other_deg 0.983 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4401 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling SHELXCD phasing