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N-terminal domain including the conserved ImpA_N region of the TssA component of the type VI secretion system from Burkholderia cenocepacia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 0.16M calcium acetate, 0.08M sodium cacodylate pH6.5, 14.4% (w/v) PEG8000, 20% (v/v) glycerol
Crystal Properties Matthews coefficient Solvent content 2.31 46.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.67 α = 90 b = 125.74 β = 90 c = 45.56 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1.04434 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.67 99.8 0.043 0.022 0.999 21.2 5.4 27244
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 99 0.344 0.177 0.909 4.4 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 46.21 25817 1381 99.74 0.17966 0.17719 0.22594 0.2278 RANDOM 29.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -0.33 -0.26
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 53.901 r_scbond_other 53.899 r_long_range_B_other 38.957 r_long_range_B_refined 38.509 r_scangle_other 36.698 r_dihedral_angle_2_deg 35.32 r_mcbond_other 35.001 r_mcbond_it 34.991 r_mcangle_it 25.902 r_mcangle_other 25.893
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 53.901 r_scbond_other 53.899 r_long_range_B_other 38.957 r_long_range_B_refined 38.509 r_scangle_other 36.698 r_dihedral_angle_2_deg 35.32 r_mcbond_other 35.001 r_mcbond_it 34.991 r_mcangle_it 25.902 r_mcangle_other 25.893 r_dihedral_angle_4_deg 18.639 r_dihedral_angle_3_deg 13.091 r_dihedral_angle_1_deg 5.323 r_angle_refined_deg 1.567 r_angle_other_deg 1.007 r_chiral_restr 0.103 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1971 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling SHELXCD phasing