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C-Phycocyanin from heterocyst forming filamentous cyanobacterium Nostoc sp. WR13
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other not published yet
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 Morpheus crystallisation screen condition C4:
37.5% MPD_Peg1K_Peg3350 precipitant, 0.1M buffer system (imidazole & MES) and the NPS (nitrate, phosphate & sulfate) mix of additives.
Crystal Properties Matthews coefficient Solvent content 3.72 66.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.473 α = 90 b = 151.473 β = 90 c = 39.764 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-09-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.513 131.179 94.6 0.033 0.037 0.016 1 20.5 5.6 73328 27.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.513 1.589 54 1.013 1.135 0.47 0.609 1.5 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT not published yet 1.513 75.75 69746 3582 89.58 0.11678 0.11487 0.122 0.15396 0.1509 RANDOM 43.086
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -1.57
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.627 r_dihedral_angle_2_deg 32.17 r_sphericity_bonded 28.8 r_dihedral_angle_3_deg 14.161 r_dihedral_angle_4_deg 13.202 r_long_range_B_refined 7.54 r_scangle_other 7.099 r_long_range_B_other 7.077 r_scbond_it 6.428 r_scbond_other 6.426
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.627 r_dihedral_angle_2_deg 32.17 r_sphericity_bonded 28.8 r_dihedral_angle_3_deg 14.161 r_dihedral_angle_4_deg 13.202 r_long_range_B_refined 7.54 r_scangle_other 7.099 r_long_range_B_other 7.077 r_scbond_it 6.428 r_scbond_other 6.426 r_mcangle_it 5.396 r_mcangle_other 5.395 r_dihedral_angle_1_deg 5.152 r_mcbond_it 4.413 r_mcbond_other 4.389 r_rigid_bond_restr 3.657 r_angle_refined_deg 1.612 r_angle_other_deg 1.491 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2478 Nucleic Acid Atoms Solvent Atoms 369 Heterogen Atoms 245
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling Aimless data scaling autoPROC data scaling STARANISO data scaling PHASER phasing