☰ Navigation Tabs
Crystal structure of the type III effector protein AvrRpt2 from Erwinia amylovora, a C70 family cysteine protease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 9 293 100 mM TRIS-HCL pH 9.0 10% glycerol, 100 mM sodium cacodylate, 15% PEG 6K
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.313 α = 90 b = 63.884 β = 90 c = 85.983 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.064 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 51.32 99.02 0.054 13.4 2.8 28980
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 94.76 0.664
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 51.32 28980 1536 99.02 0.2106 0.20944 0.23315 0.244 RANDOM 39.225
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.94 2.52 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.661 r_dihedral_angle_4_deg 18.555 r_dihedral_angle_3_deg 14.917 r_dihedral_angle_1_deg 7.023 r_long_range_B_refined 4.143 r_long_range_B_other 4.118 r_scangle_other 2.393 r_mcangle_it 1.888 r_mcangle_other 1.888 r_angle_refined_deg 1.865
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.661 r_dihedral_angle_4_deg 18.555 r_dihedral_angle_3_deg 14.917 r_dihedral_angle_1_deg 7.023 r_long_range_B_refined 4.143 r_long_range_B_other 4.118 r_scangle_other 2.393 r_mcangle_it 1.888 r_mcangle_other 1.888 r_angle_refined_deg 1.865 r_scbond_other 1.525 r_scbond_it 1.524 r_mcbond_it 1.258 r_mcbond_other 1.257 r_angle_other_deg 1.133 r_chiral_restr 0.12 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2454 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXCD phasing