6HPJ

Structure of human SRSF1 RRM1 bound to AACAAA RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY0.5 mM [U-99% 15N] SRSF1 RRM1, 0.5 mM RNA (5'-R(*AP*AP*CP*AP*AP*A)-3')100% D2O120 mM7atmospheric atm313b 900 AVIII 900
23D 1H-15N NOESY0.5 mM [U-99% 15N] SRSF1 RRM1, 0.5 mM NA RNA (5'-R(*AP*AP*CP*AP*AP*A)-3')90% H2O/10% D2O120 mM7atmospheric atm313Bruker 700 AVIII 700
32D 1H-13C HSQC aliphatic0.5 mM [U-99% 13C; U-99% 15N] SRSF1 RRM1, 0.5 mM NA RNA (5'-R(*AP*AP*CP*AP*AP*A)-3')90% H2O/10% D2O120 mM7atmospheric atm313Bruker 700 AVIII 700
42D 1H-13C HSQC aromatic0.5 mM [U-99% 13C; U-99% 15N] SRSF1 RRM1, 0.5 mM NA RNA (5'-R(*AP*AP*CP*AP*AP*A)-3')90% H2O/10% D2O120 mM7atmospheric atm313Bruker 700 AVIII 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1Bruker500 AVIII500
2Bruker600 AVIII600
3Bruker700 AVIII700
4b900 AVIII900
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3chemical shift assignmentSparkyGoddard
4peak pickingCANDIDHerrmann, Guntert and Wuthrich