6HPJ
Structure of human SRSF1 RRM1 bound to AACAAA RNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 0.5 mM [U-99% 15N] SRSF1 RRM1, 0.5 mM RNA (5'-R(*AP*AP*CP*AP*AP*A)-3') | 100% D2O | 120 mM | 7 | atmospheric atm | 313 | b 900 AVIII 900 |
2 | 3D 1H-15N NOESY | 0.5 mM [U-99% 15N] SRSF1 RRM1, 0.5 mM NA RNA (5'-R(*AP*AP*CP*AP*AP*A)-3') | 90% H2O/10% D2O | 120 mM | 7 | atmospheric atm | 313 | Bruker 700 AVIII 700 |
3 | 2D 1H-13C HSQC aliphatic | 0.5 mM [U-99% 13C; U-99% 15N] SRSF1 RRM1, 0.5 mM NA RNA (5'-R(*AP*AP*CP*AP*AP*A)-3') | 90% H2O/10% D2O | 120 mM | 7 | atmospheric atm | 313 | Bruker 700 AVIII 700 |
4 | 2D 1H-13C HSQC aromatic | 0.5 mM [U-99% 13C; U-99% 15N] SRSF1 RRM1, 0.5 mM NA RNA (5'-R(*AP*AP*CP*AP*AP*A)-3') | 90% H2O/10% D2O | 120 mM | 7 | atmospheric atm | 313 | Bruker 700 AVIII 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | 500 AVIII | 500 |
2 | Bruker | 600 AVIII | 600 |
3 | Bruker | 700 AVIII | 700 |
4 | b | 900 AVIII | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | Sparky | Goddard | |
4 | peak picking | CANDID | Herrmann, Guntert and Wuthrich |