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Cytochrome P460 from Methylococcus capsulatus (Bath)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 291 2microlitres of 15mg/ml protein in 20mM Tris buffer, pH8, with an equivalent volume of reservoir solution containing 0.1M Tris, 2.4M Ammonium sulfate pH8
Crystal Properties Matthews coefficient Solvent content 2.62 53.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.623 α = 90 b = 81.647 β = 90 c = 85.264 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.928 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 46.62 99.9 0.043 0.048 0.02 1 13.7 5.4 70585 16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.38 98.5 1.048 1.195 0.562 0.486 1.2 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.36 42.67 68885 1103 99.03 0.1969 0.1965 0.1969 0.2237 0.2222 RANDOM 19.701
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.21 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.652 r_dihedral_angle_1_deg 17.623 r_dihedral_angle_4_deg 14.139 r_dihedral_angle_3_deg 13.404 r_mcangle_it 2.401 r_angle_refined_deg 1.84 r_mcbond_it 1.699 r_mcbond_other 1.677 r_angle_other_deg 1.557 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.652 r_dihedral_angle_1_deg 17.623 r_dihedral_angle_4_deg 14.139 r_dihedral_angle_3_deg 13.404 r_mcangle_it 2.401 r_angle_refined_deg 1.84 r_mcbond_it 1.699 r_mcbond_other 1.677 r_angle_other_deg 1.557 r_chiral_restr 0.084 r_gen_planes_other 0.066 r_gen_planes_refined 0.024 r_bond_refined_d 0.021 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2159 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling Auto-Rickshaw phasing