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Crystal Structure of Human APRT wild type in complex with Phosphate ion.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FCH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 NaOAc, PEG4000, Glycerol, Tris
Crystal Properties Matthews coefficient Solvent content 2.28 45.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.41 α = 77.07 b = 47.6 β = 69.39 c = 47.66 γ = 61.69
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9785 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44.5 94.8 0.07 0.986 6.1 2.2 35712
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 94.2 0.336 1.7 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6FCH 1.7 44.5 33932 1779 94.83 0.1835 0.1823 0.205 0.2301 RANDOM 24.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.53 -0.41 -0.24 0.12 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.824 r_dihedral_angle_4_deg 22.12 r_dihedral_angle_3_deg 13.986 r_dihedral_angle_1_deg 6.062 r_mcangle_it 2.69 r_mcbond_it 2.037 r_mcbond_other 2.026 r_angle_refined_deg 1.083 r_angle_other_deg 0.576 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.824 r_dihedral_angle_4_deg 22.12 r_dihedral_angle_3_deg 13.986 r_dihedral_angle_1_deg 6.062 r_mcangle_it 2.69 r_mcbond_it 2.037 r_mcbond_other 2.026 r_angle_refined_deg 1.083 r_angle_other_deg 0.576 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2663 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 10
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction PHASER phasing