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Structure of the REC114 PH domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293.15 0.25 M ammonium sulphate, 0.1 M MES (pH 6.5), 28% PEG 5000 MME
Crystal Properties Matthews coefficient Solvent content 4.25 71.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.49 α = 90 b = 107.49 β = 90 c = 82.79 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2017-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.96600 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 93 99.6 0.057 24.2 11.2 10262 1.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.57 97.5 0.548 1.1 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 46.59 9618 536 99.68 0.2414 0.23867 0.2462 0.2887 0.2894 RANDOM 77.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.64 -0.82 -1.64 5.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.375 r_dihedral_angle_3_deg 16.401 r_dihedral_angle_4_deg 15.99 r_long_range_B_other 12.849 r_long_range_B_refined 12.834 r_scangle_other 10.603 r_mcangle_it 8.16 r_mcangle_other 8.155 r_scbond_it 7.15 r_dihedral_angle_1_deg 7.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.375 r_dihedral_angle_3_deg 16.401 r_dihedral_angle_4_deg 15.99 r_long_range_B_other 12.849 r_long_range_B_refined 12.834 r_scangle_other 10.603 r_mcangle_it 8.16 r_mcangle_other 8.155 r_scbond_it 7.15 r_dihedral_angle_1_deg 7.106 r_scbond_other 7.102 r_mcbond_it 5.601 r_mcbond_other 5.574 r_angle_refined_deg 1.256 r_angle_other_deg 0.813 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 899 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling autoSHARP phasing