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Fragment of the C-terminal domain of the TssA component of the type VI secretion system from Burkholderia cenocepacia
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 0.1 M Citric acid pH 5.0, 20 % (w/v) PEG 6000
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.26 α = 90 b = 62.7 β = 90 c = 65.74 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920000 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 38.9 97 0.068 0.039 13.2 4.5 9502
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.83 0.697 0.387 700
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.78 38.9 9048 454 96.26 0.19118 0.18891 0.2006 0.23729 0.2475 RANDOM 28.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 -1.08 -0.33
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 42.75 r_scbond_other 42.75 r_scangle_other 30.949 r_dihedral_angle_2_deg 30.542 r_long_range_B_other 26.475 r_long_range_B_refined 26.274 r_dihedral_angle_3_deg 11.554 r_dihedral_angle_4_deg 8.955 r_mcangle_it 6.041 r_mcangle_other 6.034
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 42.75 r_scbond_other 42.75 r_scangle_other 30.949 r_dihedral_angle_2_deg 30.542 r_long_range_B_other 26.475 r_long_range_B_refined 26.274 r_dihedral_angle_3_deg 11.554 r_dihedral_angle_4_deg 8.955 r_mcangle_it 6.041 r_mcangle_other 6.034 r_mcbond_it 5.285 r_mcbond_other 5.284 r_dihedral_angle_1_deg 4.263 r_angle_refined_deg 1.316 r_angle_other_deg 0.913 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 752 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling SHELXDE phasing