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Receptor-bound Ghrelin conformation
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.37 mM [U-15N]-Phe-Leu-Val Ghrelin 1-18, 2.05 uM [U-2H] Ghrelin receptor 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 6 2D 1H-1H TOCSY 1.37 mM [U-15N]-Phe-Leu-Val Ghrelin 1-18, 2.05 uM [U-2H] Ghrelin receptor 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 2 2D 1H-1H NOESY 1.37 mM [U-15N]-Phe-Leu-Val Ghrelin 1-18, 2.05 uM [U-2H] Ghrelin receptor, 2.05 uM JMV5327 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 5 2D 1H-1H TOCSY 1.37 mM [U-15N]-Phe-Leu-Val Ghrelin 1-18, 2.05 uM [U-2H] Ghrelin receptor, 2.05 uM JMV5327 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 3 3D 1H-1H-15N NOESY-HMQC 1.15 mM [U-15N]-Phe-Leu-Val-Ser-Gln-Glu Ghrelin 1-18, 1.72 uM [U-2H] Ghrelin receptor 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 7 2D 1H-15N SOFAST-HMQC 1.15 mM [U-15N]-Phe-Leu-Val-Ser-Gln-Glu Ghrelin 1-18, 1.72 uM [U-2H] Ghrelin receptor 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 4 3D 1H-1H-15N NOESY-HMQC 1.15 mM [U-15N]-Phe-Leu-Val-Ser-Gln-Glu Ghrelin 1-18, 1.72 uM [U-2H] Ghrelin receptor, 1.72 uM JMV5327 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700 8 2D 1H-15N SOFAST-HMQC 1.15 mM [U-15N]-Phe-Leu-Val-Ser-Gln-Glu Ghrelin 1-18, 1.72 uM [U-2H] Ghrelin receptor, 1.72 uM JMV5327 90% H2O/10% D2O 100 KCl mM 6.5 1 atm 280 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.5 Bruker Biospin 4 processing TopSpin 3.2 Bruker Biospin 2 peak picking Sparky 1.2 T. D. Goddard and D. G. Kneller, SPARKY 3,
University of California, San Francisco 3 structure calculation Amber 14 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman