☰ Navigation Tabs
Structure of S70C BlaC from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 0.2 M NH4NO3
20% w/v PEG3350
Crystal Properties Matthews coefficient Solvent content 2.03 39.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.6 α = 90 b = 76.41 β = 90.7 c = 79.32 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.07 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 79.31 99.8 0.05 0.997 9.7 6.6 58936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.66 98.9 0.377 0.762 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2GDN 1.63 79.31 56014 2922 99.79 0.23601 0.23407 0.2419 0.27514 0.2816 RANDOM 16.679
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.65 0.43 0.29 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.014 r_dihedral_angle_4_deg 19.881 r_dihedral_angle_3_deg 13.113 r_dihedral_angle_1_deg 6.544 r_long_range_B_refined 3.435 r_long_range_B_other 3.435 r_scangle_other 2.69 r_mcangle_it 2.122 r_mcangle_other 2.122 r_angle_refined_deg 1.895
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.014 r_dihedral_angle_4_deg 19.881 r_dihedral_angle_3_deg 13.113 r_dihedral_angle_1_deg 6.544 r_long_range_B_refined 3.435 r_long_range_B_other 3.435 r_scangle_other 2.69 r_mcangle_it 2.122 r_mcangle_other 2.122 r_angle_refined_deg 1.895 r_scbond_it 1.885 r_scbond_other 1.885 r_mcbond_it 1.501 r_mcbond_other 1.501 r_angle_other_deg 1.085 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4036 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing