X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6H1J 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.729325% PEG 3350, 250 mM magnesium chloride, 0.1 M sodium citrate, pH 5.7
Crystal Properties
Matthews coefficientSolvent content
2.2845.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.86α = 90
b = 95.36β = 93.51
c = 130.55γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2014-10-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA0.91840SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.847.799.80.056123.699074
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.85

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6H1J1.847.6894120495499.840.177440.175630.21149RANDOM36.575
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.51.23-2.14-1.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.563
r_dihedral_angle_4_deg20.472
r_dihedral_angle_3_deg14.191
r_long_range_B_refined7.587
r_long_range_B_other7.587
r_dihedral_angle_1_deg6.191
r_scangle_other2.22
r_mcangle_it1.98
r_mcangle_other1.98
r_scbond_it1.571
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.563
r_dihedral_angle_4_deg20.472
r_dihedral_angle_3_deg14.191
r_long_range_B_refined7.587
r_long_range_B_other7.587
r_dihedral_angle_1_deg6.191
r_scangle_other2.22
r_mcangle_it1.98
r_mcangle_other1.98
r_scbond_it1.571
r_scbond_other1.571
r_angle_refined_deg1.277
r_mcbond_it1.272
r_mcbond_other1.27
r_angle_other_deg0.924
r_chiral_restr0.063
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7483
Nucleic Acid Atoms
Solvent Atoms705
Heterogen Atoms147

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
SHARPphasing