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Siderophore hydrolase EstB from Aspergillus fumigatus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M MES pH 5.5
17% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.1 41.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.93 α = 90 b = 102.85 β = 92.14 c = 65.06 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 45 97.4 0.046 11.1 3.1 53434
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 97.6 0.501 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 15 50664 2666 97.21 0.21274 0.21114 0.2162 0.24347 0.2452 RANDOM 48.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 -1.87 -2.52 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.73 r_sphericity_free 23.212 r_dihedral_angle_4_deg 19.546 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 5.458 r_sphericity_bonded 4.33 r_long_range_B_refined 2.193 r_long_range_B_other 2.193 r_rigid_bond_restr 1.479 r_mcangle_it 1.466
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.73 r_sphericity_free 23.212 r_dihedral_angle_4_deg 19.546 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 5.458 r_sphericity_bonded 4.33 r_long_range_B_refined 2.193 r_long_range_B_other 2.193 r_rigid_bond_restr 1.479 r_mcangle_it 1.466 r_mcangle_other 1.466 r_mcbond_it 1.377 r_mcbond_other 1.373 r_scbond_it 1.32 r_scbond_other 1.319 r_scangle_other 1.238 r_angle_refined_deg 1.115 r_angle_other_deg 0.888 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5105 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing