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Siderophore hydrolase EstB mutant E211Q from Aspergillus fumigatus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GUD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.51 50.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.67 α = 90 b = 91.83 β = 90 c = 130.55 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97264 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 45 97.9 0.074 18 4.9 29327
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 97.9 0.417 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6GUD 2.3 15 27731 1460 97.44 0.20641 0.2041 0.2107 0.25058 0.257 RANDOM 34.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.64 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.261 r_sphericity_free 25.643 r_sphericity_bonded 16.941 r_dihedral_angle_3_deg 11.52 r_dihedral_angle_4_deg 11.419 r_dihedral_angle_1_deg 5.203 r_long_range_B_refined 1.812 r_long_range_B_other 1.737 r_mcangle_it 0.867 r_mcangle_other 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.261 r_sphericity_free 25.643 r_sphericity_bonded 16.941 r_dihedral_angle_3_deg 11.52 r_dihedral_angle_4_deg 11.419 r_dihedral_angle_1_deg 5.203 r_long_range_B_refined 1.812 r_long_range_B_other 1.737 r_mcangle_it 0.867 r_mcangle_other 0.867 r_scangle_other 0.749 r_angle_refined_deg 0.731 r_angle_other_deg 0.67 r_mcbond_it 0.597 r_mcbond_other 0.596 r_scbond_it 0.511 r_scbond_other 0.507 r_rigid_bond_restr 0.157 r_chiral_restr 0.03 r_bond_refined_d 0.003 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4457 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing