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CDK2/CyclinA in complex with AZD5438
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 PROTEIN AT 5MG PER ML. 0.6 TO 0.8M KCL, 0.9 TO 1.2M (NH402SO4, AND 100MM HEPES (PH 7.0), 0.5mM Inhibitor
Crystal Properties Matthews coefficient Solvent content 2.81 56.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.269 α = 90 b = 133.224 β = 90 c = 148.145 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.987 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 99.26 98.6 0.1 12.1 6.5 99925
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.02 93.2 1.2 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H1S 1.99 99.26 95016 4909 98.51 0.19836 0.19652 0.204 0.23425 0.2397 RANDOM 38.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -0.23 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.847 r_dihedral_angle_4_deg 20.235 r_dihedral_angle_3_deg 16.525 r_long_range_B_other 9.899 r_long_range_B_refined 9.885 r_scangle_other 7.369 r_dihedral_angle_1_deg 6.002 r_mcangle_it 5.533 r_mcangle_other 5.533 r_scbond_it 4.805
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.847 r_dihedral_angle_4_deg 20.235 r_dihedral_angle_3_deg 16.525 r_long_range_B_other 9.899 r_long_range_B_refined 9.885 r_scangle_other 7.369 r_dihedral_angle_1_deg 6.002 r_mcangle_it 5.533 r_mcangle_other 5.533 r_scbond_it 4.805 r_scbond_other 4.805 r_mcbond_it 3.757 r_mcbond_other 3.752 r_angle_other_deg 3.589 r_angle_refined_deg 1.779 r_chiral_restr 0.113 r_bond_refined_d 0.017 r_gen_planes_other 0.013 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8908 Nucleic Acid Atoms Solvent Atoms 539 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing