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CDK2/CyclinA in complex with SU9516
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 PROTEIN AT 5MG PER ML. 0.6 TO 0.8M KCL, 0.9 TO 1.2M (NH402SO4, AND 100MM HEPES (PH 7.0), 0.5mM Inhibitor
Crystal Properties Matthews coefficient Solvent content 2.94 58.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.353 α = 90 b = 135.825 β = 90 c = 149.625 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.987 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100.77 100 0.09 12.1 7.3 104286
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 2.1 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H1S 2 100.77 99091 5195 99.95 0.19321 0.19165 0.2011 0.22315 0.2312 RANDOM 44.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.44 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.868 r_dihedral_angle_4_deg 19.411 r_dihedral_angle_3_deg 15.78 r_long_range_B_other 10.31 r_long_range_B_refined 10.288 r_scangle_other 7.63 r_dihedral_angle_1_deg 5.7 r_mcangle_other 5.575 r_mcangle_it 5.574 r_scbond_it 5.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.868 r_dihedral_angle_4_deg 19.411 r_dihedral_angle_3_deg 15.78 r_long_range_B_other 10.31 r_long_range_B_refined 10.288 r_scangle_other 7.63 r_dihedral_angle_1_deg 5.7 r_mcangle_other 5.575 r_mcangle_it 5.574 r_scbond_it 5.097 r_scbond_other 5.096 r_mcbond_it 4.148 r_mcbond_other 4.147 r_angle_other_deg 3.644 r_angle_refined_deg 1.723 r_chiral_restr 0.112 r_bond_refined_d 0.018 r_gen_planes_other 0.012 r_gen_planes_refined 0.009 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8945 Nucleic Acid Atoms Solvent Atoms 537 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing