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Human STK10 bound to BIRB-796
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4USE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 20% PEG6000, 10% ethylene glycol, 0.1M MES pH 6.0, 0.1M magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.11 60.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.667 α = 90 b = 100.667 β = 90 c = 145.786 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R CdTe 300K 2016-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9282 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 87.18 100 0.07 22.8 17.7 21422
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.32 100 2.1 18.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4use 2.25 87.18 20273 1106 99.98 0.24358 0.24037 0.2413 0.30104 0.2969 RANDOM 97.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.86 0.93 1.86 -6.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.695 r_dihedral_angle_4_deg 18.995 r_dihedral_angle_3_deg 16.67 r_dihedral_angle_1_deg 6.151 r_long_range_B_refined 4.356 r_long_range_B_other 4.355 r_mcangle_it 2.659 r_mcangle_other 2.658 r_scangle_other 2.2 r_mcbond_it 1.533
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.695 r_dihedral_angle_4_deg 18.995 r_dihedral_angle_3_deg 16.67 r_dihedral_angle_1_deg 6.151 r_long_range_B_refined 4.356 r_long_range_B_other 4.355 r_mcangle_it 2.659 r_mcangle_other 2.658 r_scangle_other 2.2 r_mcbond_it 1.533 r_mcbond_other 1.533 r_scbond_it 1.295 r_scbond_other 1.295 r_angle_refined_deg 1.111 r_angle_other_deg 0.764 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2196 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing