☰ Navigation Tabs
NMR structure of the free helix bundle domain from the functional pRN1 primase
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 15N-NOESY-HSQC 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III HD 900 2 13Cali-NOESY-HSQC 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III HD 900 3 13Caro-NOESY-HSQC 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III HD 900 4 13Cali-HSQC 0.7 mM [U-100% 13C] helix bundle domain 100% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III 600 5 13Caro-HSQC 0.7 mM [U-100% 13C] helix bundle domain 100% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III 600 6 15N-HSQC 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III HD 900 7 3D HNCACB 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III 700 8 3D CBCA(CO)NH 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III 700 9 3D HNCA 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III 700 10 3D HN(CO)CA 1.2 mM [U-99% 13C; U-99% 15N] helix bundle domain, 0.9 mM [U-99% 15N] helix bundle domain 90% H2O/10% D2O 50mM NaCl 7.0 ambient atm 298 Bruker AVANCE III 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 900 2 Bruker AVANCE III 700 3 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing with the SANDER module of AMBER12 simulated annealing in implicit water under ff12SB force-field Amber
NMR Ensemble Information Conformer Selection Criteria 20 structures for lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Sparky Goddard 4 peak picking CANDID Herrmann, Guntert and Wuthrich