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Human CSNK1G3 bound to SB-223133
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IZR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2 M sodium/potassium tartrate, 0.1 M bis-tris-propane pH 8.5, 20% PEG3350, 10% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.67 53.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.75 α = 90 b = 56.75 β = 90 c = 221.55 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R CdTe 300K 2012-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 49.15 99.6 0.14 0.975 6.2 4.4 74333
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 98 0.617 2.2 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IZR 1.45 47.98 71316 2979 99.38 0.13503 0.13367 0.1349 0.16732 0.1683 RANDOM 24.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.03 -0.06 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.559 r_sphericity_free 31.095 r_sphericity_bonded 18.296 r_dihedral_angle_4_deg 14.837 r_dihedral_angle_3_deg 12.483 r_dihedral_angle_1_deg 6.999 r_long_range_B_refined 5.692 r_long_range_B_other 5.691 r_scangle_other 4.201 r_mcangle_other 3.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.559 r_sphericity_free 31.095 r_sphericity_bonded 18.296 r_dihedral_angle_4_deg 14.837 r_dihedral_angle_3_deg 12.483 r_dihedral_angle_1_deg 6.999 r_long_range_B_refined 5.692 r_long_range_B_other 5.691 r_scangle_other 4.201 r_mcangle_other 3.983 r_mcangle_it 3.98 r_scbond_it 3.391 r_scbond_other 3.39 r_mcbond_other 3.087 r_mcbond_it 3.086 r_rigid_bond_restr 2.291 r_angle_refined_deg 1.413 r_angle_other_deg 1.066 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2365 Nucleic Acid Atoms Solvent Atoms 365 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing