X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4FXJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29010-16% PEG 3350, 100 mM sodium Cacodylate, 50 mM MgCl2, 100 mM KCl
Crystal Properties
Matthews coefficientSolvent content
2.2645.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.35α = 89.72
b = 108.94β = 71.13
c = 124.34γ = 66.94
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2014-08-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.97624DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.96116.598.68.42.788052
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.963.04

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4fxj2.96116.582638420398.630.236770.236030.25159RANDOM93.425
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.450.270.30.910.34-0.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.316
r_dihedral_angle_3_deg15.413
r_dihedral_angle_4_deg14.052
r_long_range_B_refined5.363
r_long_range_B_other5.363
r_dihedral_angle_1_deg5.329
r_mcangle_it3.577
r_mcangle_other3.577
r_scangle_other2.712
r_mcbond_it2.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.316
r_dihedral_angle_3_deg15.413
r_dihedral_angle_4_deg14.052
r_long_range_B_refined5.363
r_long_range_B_other5.363
r_dihedral_angle_1_deg5.329
r_mcangle_it3.577
r_mcangle_other3.577
r_scangle_other2.712
r_mcbond_it2.003
r_mcbond_other2.003
r_scbond_it1.471
r_scbond_other1.471
r_angle_refined_deg1.163
r_angle_other_deg0.887
r_chiral_restr0.062
r_bond_refined_d0.008
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms31232
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms112

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing