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Structure of CutA from Synechococcus elongatus PCC7942 complexed with Bis-Tris molecule
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NAQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 294 0.1 M Bis-Tris pH 5.5, 0.2 M Li2SO4, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.25 45.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.59 α = 90 b = 96.55 β = 97.35 c = 48.9 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9795 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.32 94.2 0.076 5.6 2.7 20245
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 93.2 0.235 1.6 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NAQ 2 48.32 19551 667 93.82 0.19437 0.19231 0.1998 0.25502 0.2532 RANDOM 25.672
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 1.4 -0.19 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.17 r_dihedral_angle_4_deg 15.147 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 5.818 r_long_range_B_refined 3.752 r_long_range_B_other 3.751 r_scangle_other 2.086 r_angle_refined_deg 1.57 r_mcangle_it 1.5 r_mcangle_other 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.17 r_dihedral_angle_4_deg 15.147 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 5.818 r_long_range_B_refined 3.752 r_long_range_B_other 3.751 r_scangle_other 2.086 r_angle_refined_deg 1.57 r_mcangle_it 1.5 r_mcangle_other 1.5 r_scbond_it 1.303 r_scbond_other 1.303 r_angle_other_deg 0.95 r_mcbond_it 0.928 r_mcbond_other 0.926 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2475 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing