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Structure of CutA from Synechococcus elongatus PCC7942
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GDV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 294 0.1 M MIB buffer pH 4, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.12 42.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.149 α = 90 b = 96.371 β = 94.19 c = 48.977 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9795 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 48.19 99.9 0.041 0.996 11.2 7.2 32752
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.87 100 0.218 0.996 3.2 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6GDV 1.75 48.19 31063 1662 99.89 0.1988 0.19699 0.23223 0.2557 RANDOM 28.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.99 0.08 0.78 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.547 r_dihedral_angle_3_deg 11.776 r_dihedral_angle_4_deg 9.999 r_dihedral_angle_1_deg 5.959 r_long_range_B_refined 4.343 r_long_range_B_other 4.258 r_scangle_other 1.778 r_angle_refined_deg 1.595 r_scbond_it 1.142 r_scbond_other 1.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.547 r_dihedral_angle_3_deg 11.776 r_dihedral_angle_4_deg 9.999 r_dihedral_angle_1_deg 5.959 r_long_range_B_refined 4.343 r_long_range_B_other 4.258 r_scangle_other 1.778 r_angle_refined_deg 1.595 r_scbond_it 1.142 r_scbond_other 1.141 r_mcangle_it 1.064 r_mcangle_other 1.064 r_angle_other_deg 0.923 r_mcbond_it 0.674 r_mcbond_other 0.673 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2462 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing