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Crystal structure of Mto2 twin-cysteine dimerisation domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 290 10-22% PEG 3350, 0.2M sodium acetate trihydrate or sodium thiocyanate pH6-7
Crystal Properties Matthews coefficient Solvent content 2.27 45.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.704 α = 90 b = 73.704 β = 90 c = 54.363 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-10-08 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 1.0 Diamond I02 2 SYNCHROTRON DIAMOND BEAMLINE I04 0.979 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 41.39 99.9 0.155 0.173 0.078 0.97 6.6 5.1 26976 19.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 99.6 0.455 0.509 0.226 0.92 2.6 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 41.39 25696 1261 99.89 0.1538 0.15233 0.1526 0.18317 0.1827 RANDOM 22.947
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 -0.24 -0.47 1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.009 r_sphericity_free 19.413 r_dihedral_angle_4_deg 19.306 r_dihedral_angle_3_deg 10.582 r_sphericity_bonded 9.998 r_scangle_other 4.327 r_dihedral_angle_1_deg 4.149 r_rigid_bond_restr 3.978 r_long_range_B_refined 3.767 r_long_range_B_other 3.766
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.009 r_sphericity_free 19.413 r_dihedral_angle_4_deg 19.306 r_dihedral_angle_3_deg 10.582 r_sphericity_bonded 9.998 r_scangle_other 4.327 r_dihedral_angle_1_deg 4.149 r_rigid_bond_restr 3.978 r_long_range_B_refined 3.767 r_long_range_B_other 3.766 r_scbond_it 3.708 r_scbond_other 3.694 r_mcangle_other 2.795 r_mcangle_it 2.783 r_mcbond_it 2.376 r_mcbond_other 2.292 r_angle_refined_deg 1.804 r_angle_other_deg 1.089 r_chiral_restr 0.128 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1027 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing