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Cryo-EM structure of respiratory complex I from Yarrowia lipolytica
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.152 f_angle_d 1.243 f_chiral_restr 0.063 f_bond_d 0.013 f_plane_restr 0.008
Sample Mitochondrial NADH:ubiquinone oxidoreductase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 124626 Reported Resolution (Å) 4.32 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) -1.5 Maximum Defocus (nm) -3 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode OTHER Specimen Holder Model Nominal Magnification 200000 Calibrated Magnification 45872 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION Leginon 1.0 CTF CORRECTION CTFFIND 4 MODEL FITTING Coot 0.8.8. INITIAL EULER ASSIGNMENT RELION 2.1 FINAL EULER ASSIGNMENT RELION 2.1 CLASSIFICATION RELION 2.1 RECONSTRUCTION RELION 2.1 MODEL REFINEMENT PHENIX 1.12_2829
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 271443