6GBD
Murine Protein Tyrosine Phosphatase PTPN13 PDZ3 Domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
4 | 3D 1H-15N NOESY | 1.0 mM [U-99% 13C; U-99% 15N] PDZ3 | 90% H2O/10% D2O | PBS | 7.4 | 1 bar | 298 | Bruker DRX 600 |
1 | 3D 1H-13C NOESY | 1.0 mM [U-99% 13C; U-99% 15N] PDZ3 | 90% H2O/10% D2O | PBS | 7.4 | 1 bar | 298 | Bruker DRX 600 |
2 | 3D HCCH-TOCSY | 1.0 mM [U-99% 13C; U-99% 15N] PDZ3 | 90% H2O/10% D2O | PBS | 7.4 | 1 bar | 298 | Bruker DRX 600 |
3 | 2D 1H-15N HSQC | 0.5 mM [U-99% 15N] PDZ3 | 90% H2O/10% D2O | PBS | 7.4 | 1 bar | 298 | Bruker AVANCE III 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
2 | Bruker | AVANCE III | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Xplor-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (medoid) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | structure calculation | Xplor-NIH | Schwieters, Kuszewski, Tjandra and Clore |