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Three dimensional structure of human carbonic anhydrase IX in complex with sulfonamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FL4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 294 1.0 M DI-AMMONIUM HYDROGEN PHOSPHATE, 0.1 M SODIUM ACETATE PH 4.5, PROTEIN 10 MG/ML, 5-10 MM INHIBITOR (STOCK SOLUTION WAS 100 MM INHIBITOR DISSOLVED IN 100% DIMETHYL SULFOXIDE)
Crystal Properties Matthews coefficient Solvent content 3.43 64.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.38 α = 90 b = 152.38 β = 90 c = 171.84 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91840 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 76.19 97.6 0.055 9.3 3 146413 23.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 95.5 0.502 2 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5FL4 1.75 76.19 139211 7170 97.58 0.16871 0.16768 0.18895 0.2017 RANDOM 32.277
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.22 0.43 -1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.989 r_dihedral_angle_4_deg 15.385 r_dihedral_angle_3_deg 11.795 r_long_range_B_refined 6.083 r_long_range_B_other 5.887 r_dihedral_angle_1_deg 5.708 r_scangle_other 3.961 r_mcangle_it 2.938 r_mcangle_other 2.938 r_scbond_it 2.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.989 r_dihedral_angle_4_deg 15.385 r_dihedral_angle_3_deg 11.795 r_long_range_B_refined 6.083 r_long_range_B_other 5.887 r_dihedral_angle_1_deg 5.708 r_scangle_other 3.961 r_mcangle_it 2.938 r_mcangle_other 2.938 r_scbond_it 2.45 r_scbond_other 2.45 r_mcbond_it 1.879 r_mcbond_other 1.877 r_angle_refined_deg 1.401 r_angle_other_deg 0.916 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7388 Nucleic Acid Atoms Solvent Atoms 880 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement SCALA data scaling