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Trichodesmium Tery_3377 (IdiA) (FutA) with iron and alanine ligand.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 L-Na-Glutamate, Alanine (racemic), Glycine, Lysine HCl (racemic), Serine (racemic),
Sodium HEPES, MOPS (acid), PEG500MME, PEG20000.
Crystal Properties Matthews coefficient Solvent content 2.18 43.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.22 α = 90 b = 83.19 β = 95.25 c = 65.16 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.979490 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 83.19 99.4 0.047 0.056 0.998 11.73 3.21 239749 15.555
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.13 99.5 0.352 0.428 0.775 3 3.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 83.19 227890 11859 99.39 0.1346 0.1337 0.1417 0.1512 0.1577 RANDOM 16.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.02 0.47 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.784 r_sphericity_free 19.987 r_dihedral_angle_4_deg 17.874 r_dihedral_angle_3_deg 12.273 r_sphericity_bonded 6.124 r_dihedral_angle_1_deg 5.567 r_rigid_bond_restr 1.939 r_angle_other_deg 1.71 r_angle_refined_deg 1.568 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.784 r_sphericity_free 19.987 r_dihedral_angle_4_deg 17.874 r_dihedral_angle_3_deg 12.273 r_sphericity_bonded 6.124 r_dihedral_angle_1_deg 5.567 r_rigid_bond_restr 1.939 r_angle_other_deg 1.71 r_angle_refined_deg 1.568 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4868 Nucleic Acid Atoms Solvent Atoms 772 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing PDB_EXTRACT data extraction